miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18239239|gb|AV943442.1|AV943442 TCTCTTAAGGTCTTATATTTAGGAACGGAGGGAGTACATGCTGAGCGTCTAAGAATGTCACTCCCAAGAACATACACGAT
TGCAAGCATGATGTAACATTTATAATTACTCCCTCTGTAAACTAATATAAGAGTGTTTGGACCCAACCGCTCTTATATTA
GTTTACCGAGGGAGTACCTTACAAGCAGTTCAGTACATAAGACTCACAAGGCGCTAATGGGCAATTAGCTGTCATCACTA
TTTGATGCAATGGCTTTAGTCTGCAGTCCAGCTTTGCTCCACGACCTCACGTACTTTACGGTTGTATTCCCGCTTGTTCT
CGCTGAATAGGCGGGCCGCTTCTGAGTTGGCAGGTGAATTTGGGTTTGGGTCGCAAAGCAGTGACTGAATGGATGTCAAT
ATAGCAGCTACATCATATATCGGGCTCCATTGGTTTTGGAGGATATCTAAACATATGCTTCCATCCGCATAAATGTTGGG
ATGAAACATCCGAGAAACAAACCGCACTGTAGGTGGCTTATTAGGATAATCTTCAGTAAACTGAAGTGTCAGCTTGAACG
TACCACCATCCCAGGGAGTATCATCAGGACCAAAAATTACAGCATTCCACAGCATTATATTGTTATCCTGAGGTGCGCCG
CTTATGCCCGCAGGAGGATCCTGCATCAGCCGTTTGAAATCCCTCATCA




Most similar to sp|P25866|UBC2_WHEAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2 2 OS=Triticum
           aestivum GN=UBC2 PE=1 SV=1
          Length = 152

 Score =  294 bits (753), Expect = 3e-79
 Identities = 138/143 (96%), Positives = 140/143 (97%)
 Frame = -3

Query: 687 MRDFKRLMQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT 508
           MRDFKRL QDPPAGISGAP DNNI LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT 69

Query: 507 VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 328
           VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 327 FSENKREYNRKVREVVEQSWTAD 259
           +SENKREYNRKVREVVEQSWTAD
Sbjct: 130 YSENKREYNRKVREVVEQSWTAD 152